Please type help(INSTALL) or help(install.packages) in R for information on how to install packages from this directory. The manual R Installation and Administration (also contained in the R base sources) explains the process in detail.

CRAN Task Views allow you to browse packages by topic and provide tools to automatically install all packages for special areas of interest.

Daily Package Check Results

All packages are tested daily on a machine running Debian GNU/Linux. The results of R CMD check for the current release version of R, the patched and development version are summarized in the check summary (some timings are also available).

Packages are also tested daily on MacOS X. The results of R CMD check for the current development version of R are summarized in the MacOS X check summary.

Packages are also checked under Windows, but only at the day a package appears on CRAN. The results of Rcmd check for the current release version, and the development version of R are summarized in the Windows check summary.

Writing Your Own Packages

aaMI	Mutual information for protein sequence alignments
abind	Combine multi-dimensional arrays
accuracy	Tools for testing and improving accuracy of statistical results.
acepack	ace() and avas() for selecting regression transformations
actuar	Actuarial functions
adapt	adapt -- multidimensional numerical integration
ade4	Analysis of Environmental Data : Exploratory and Euclidean method
adehabitat	Analysis of habitat selection by animals
adlift	An adaptive lifting scheme algorithm
agce	analysis of growth curve experiments
akima	Interpolation of irregularly spaced data
AlgDesign	AlgDesign
alr3	Methods and data to accompany Applied Linear Regression 3rd editi
amap	Another Multidimensional Analysis Package
AMORE	A MORE flexible neural network package
AnalyzeFMRI	Functions for analysis of fMRI datasets stored in the ANALYZE for
aod	Analysis of Overdispersed Data
ape	Analyses of Phylogenetics and Evolution
aplpack	Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, ...
apTreeshape	Analyses of Phylogenetic Treeshape
ArDec	Time series autoregressive decomposition
arules	Mining Association Rules and Frequent Itemsets
ash	David Scott's ASH routines
assist	A Suite of S-Plus Functions Implementing Smoothing Splines
aster	Aster Models
asypow	Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
aws	Adaptive Weights Smoothing
BACCO	Bundle of emulator, calibrator, approximator
bayesm	Bayesian Inference for Marketing/Micro-econometrics
bayesmix	Bayesian Mixture Models with JAGS
bayesSurv	Bayesian Survival Regression with Flexible Error and Random Effec
BayesTree	Bayesian Methods for Tree Based Models
BayesValidate	BayesValidate Package
betareg	Beta Regression.
Bhat	General likelihood exploration
BHH2	Useful Functions for Box, Hunter and Hunter II
bicreduc	Reduction algorithm for the NPMLE for the distribution function o
bim	Bayesian Interval Mapping Diagnostics
bindata	Generation of Artificial Binary Data
Biodem	Biodemography functions
biopara	Self-contained parallel system for R
bitops	Functions for Bitwise operations
bivpois	Bivariate Poisson Models Using The EM Algorithm
blighty	United Kingdom coastlines
blockrand	Randomization for block random clinical trials
BMA	Bayesian Model Averaging
boa	Bayesian Output Analysis Program (BOA) for MCMC
Bolstad	Bolstad functions
boolean	Boolean logit and probit
boost	Boosting Methods for Real and Simulated Data
boot	Bootstrap R (S-Plus) Functions (Canty)
bootstrap	Functions for the Book "An Introduction to the Bootstrap"
bqtl	Bayesian QTL mapping toolkit
BradleyTerry	Bradley-Terry models
brlr	Bias-reduced logistic regression
BRugs	OpenBUGS and its R interface BRugs
BSDA	Basic Statistics and Data Analysis
BsMD	Bayes Screening and Model Discrimination
butler	Unit testing, profiling and benchmarking for R
calibrate	Calibration of Biplot Axes
caMassClass	Processing & Classification of Protein Mass Spectra (SELDI) Data
car	Companion to Applied Regression
cat	Analysis of categorical-variable datasets with missing values
caTools	Miscellaneous tools: I/O, moving window statistics, etc.
catspec	Special models for categorical variables
cba	Clustering for Business Analytics
cclust	Convex Clustering Methods and Clustering Indexes
CDNmoney	Components of Canadian Monetary Aggregates
cfa	Analysis of configuration frequencies (CFA)
CGIwithR	CGI Programming in R
changeLOS	Change in LOS
chplot	Augmented Convex Hull Plots
chron	Chronological objects which can handle dates and times
CircStats	Circular Statistics
circular	Circular Statistics
clac	Clust Along Chromosomes, a method to call gains/losses in CGH arr
classInt	Choose univariate class intervals
classPP	Projection Pursuit for supervised classification
clim.pact	Climate analysis and downscaling package for monthly and daily da
climatol	Some Tools for Climatology
clines	Calculates Contour Lines
clue	Cluster ensembles
cluster	Cluster Analysis Extended Rousseeuw et al.
clusterRepro	Reproducibility of gene expression clusters
clustvarsel	Variable Selection for Model-Based Clustering
cmprsk	Subdistribution Analysis of Competing Risks
cobs	COBS -- Constrained B-splines
CoCo	Bundle of CoCoGraph, CoCoObjects, CoCoCore, CoCoOldData, CoCoRaw, CoCo, CoCoCg
cocorresp	Co-correspondence analysis ordination methods for community ecolo
coda	Output analysis and diagnostics for MCMC
coin	Conditional Inference Procedures in a Permutation Test Framework
colorspace	Colorspace Manipulation
combinat	combinatorics utilities
compositions	Compositional Data Analysis
concor	Concordance
concord	Concordance and reliability
conf.design	Construction of factorial designs
connectedness	Find disconnected sets for two-way classification
copula	Multivariate Dependence with Copula
corpcor	Efficient Estimation of Covariance and (Partial) Correlation
corpora	Statistics for corpus linguists
covRobust	Robust Covariance Estimation via Nearest Neighbor Cleaning
coxrobust	Robust Estimation in Cox Model
cramer	Multivariate nonparametric Cramer-Test for the two-sample-problem
crossdes	Design and Randomization in Crossover Studies
crq	Censored Quantile Regression
cslogistic	Conditionally Specified Logistic Regression
CTFS	The CTFS Large Plot Forest Dynamics Analyses
ctv	CRAN Task Views
CVThresh	Level-Dependent Cross-Validation Thresholding
cwhmisc	Bundle of cwhmath, cwhstring, cwhplot, cwhprint, cwhstat, cwhtool
cyclones	Cyclone identification
DAAG	Data Analysis And Graphics
data.table	Just like a data.frame but without rownames, up to 10 times faste
date	Functions for handling dates
Davies	The Davies quantile function
DBI	R Database Interface
dblcens	Compute the NPMLE of distribution from doubly censored data
DCluster	Functions for the detection of spatial clusters of diseases
DDHFm	Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
deal	Learning Bayesian Networks with Mixed Variables
debug	MVB's debugger for R
deldir	Delaunay Triangulation and Dirichlet (Voronoi) Tesselation.
denpro	Visualization of multivariate, functions, sets, and data
DEoptim	Differential Evolution Optimization
depmix	Dependent Mixture Models
DescribeDisplay	R interface to DescribeDisplay (GGobi plugin)
Design	Design Package
Devore5	Data sets from Devore's "Prob and Stat for Eng (5th ed)"
Devore6	Data sets from Devore's "Prob and Stat for Eng (6th ed)"
dglm	Double generalized linear models
diamonds	Analysis and sampling grids from diamond partitions
dichromat	Color schemes for dichromats
DICOM	Import medical imaging data using the DICOM Standard
digest	Create cryptographic hash digests of R objects
diptest	Hartigan's dip test statistic for unimodality - corrected code
dispmod	Dispersion models.
distr	Object orientated implementation of distributions
distrEx	Extensions of package distr
distrSim	Simulation classes based on package distr
distrTEst	Estimation and Testing classes based on package distr
diveMove	Dive analysis and calibration
doBy	Groupwise computatations
dprep	Data preprocessing and visualization functions for classification
dr	Methods for dimension reduction for regression
drc	Analysis of dose-response curves
drfit	Dose-response data evaluation
dse	Bundle of tframe, dse1, dse2
dyn	Time Series Regression
dynamicGraph	dynamicGraph
dynlm	Dynamic Linear Regression
e1071	Misc Functions of the Department of Statistics (e1071), TU Wien
eba	Elimination-By-Aspects (EBA) Models
EbayesThresh	Empirical Bayes thresholding and related methods
Ecdat	Data sets for econometrics
eco	R Package for Fitting Bayesian Models of Ecological Inference in
ecodist	Dissimilarity-based functions for ecological analysis
edci	Edge Detection and Clustering in Images
effects	Effect Displays for Linear and Generalized Linear Models
eha	Event History Analysis.
elasticnet	Elastic Net Regularization and Variable Selection
ElemStatLearn	Data sets, functions and examples from the book: "The Elements of
ellipse	Functions for drawing ellipses and ellipse-like confidence region
elliptic	elliptic functions
emme2	Read and Write to an EMME/2 databank
emplik	Empirical likelihood ratio for censored/truncated data
EMV	Estimation of Missing Values for a Data Matrix
energy	E-statistics (energy statistics) tests of fit, independence, clus
ensembleBMA	Probabilistic forecasting using Bayesian Model Averaging
Epi	A package for statistical analysis in epidemiology.
epitools	Epidemiology Tools
epsi	Edge Preserving Smoothing for Images
equivalence	Provides tests and graphics for assessing tests of equivalence
evd	Functions for extreme value distributions
evdbayes	Bayesian Analysis in Extreme Value Theory
evir	Extreme Values in R
exactLoglinTest	Monte Carlo Exact Tests for Log-linear models
exactRankTests	Exact Distributions for Rank and Permutation Tests
extRemes	Extreme value toolkit.
FactoMineR	Factor Analysis and Data Mining with R
Fahrmeir	Data from the book "Multivariate Statistical Modelling Based on G
far	Modelization for Functional AutoRegressive processes
faraway	Functions and datasets for books by Julian Faraway.
fastICA	FastICA algorithms to perform ICA and Projection Pursuit
fBasics	Rmetrics - Marketes and Basic Statistics
fCalendar	Rmetrics - Chronological Objects
fda	Functional Data Analysis
fdim	Functions for calculating fractal dimension.
femmeR	Output analysis of FEMME model results
fExtremes	Rmetrics - Extreme Financial Market Data
fgac	Generalized Archimedean Copula
fields	Tools for spatial data
filehash	Simple file-based hash table
financial	Solving financial problems in R
FLCore	Core package of FLR, fisheries modelling in R.
flexclust	Flexible Cluster Algorithms
flexmix	Flexible Mixture Modeling
fMultivar	Rmetrics - Multivariate Market Analysis
fOptions	Rmetrics - Option Valuation
foreign	Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, dBase,
fork	R functions for handling multiple processes.
FortranCallsR	Simple Fortran/C/R Interface Example
fortunes	R Fortunes
forward	Forward search
fpc	Fixed point clusters, clusterwise regression and discriminant plo
fPortfolio	Rmetrics - Portfolio Selection and Optimization
fracdiff	Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
FracSim	Simulation of L�vy motions
frailtypack	Frailty models using maximum penalized likelihood estimation
fSeries	Rmetrics - The Dynamical Process Behind Markets
ftnonpar	Features and Strings for Nonparametric Regression
FunCluster	Functional Profiling of cDNA Microarray Expression Data
fuzzyRankTests	Fuzzy Rank Tests and Confidence Intervals
g.data	Delayed-Data Packages
gafit	Genetic Algorithm for Curve Fitting
gam	Generalized Additive Models
gamair	Data for "GAMs: An Introduction with R"
gamlss	Collection of functions to fit Generalized Additive Models for Lo
GammaTest	Gamma Test Data Analysis
gap	Genetic analysis package
gbm	Generalized Boosted Regression Models
gclus	Clustering Graphics
gcmrec	General class of models for recurrent event data
gdata	Various R programming tools for data manipulation
GDD	GD device for creating bitmap graphics as jpeg, png or gif files
gee	Generalized Estimation Equation solver
geepack	Generalized Estimating Equation Package
genalg	R Based Genetic Algorithm
Geneland	Simulation and MCMC inference in landscape genetics
GeneNT	Relevance or Dependency network and signaling pathway discovery
genetics	Population Genetics
GeneTS	Microarray Time Series and Network Analysis
GenKern	Functions for generating and manipulating kernel density estimate
geometry	Mesh generation and surface tesselation
geoR	Analysis of geostatistical data
geoRglm	geoRglm - a package for generalised linear spatial models
ggm	Graphical Gaussian Models
ggplot	Grammar of graphics based plots for R
giRaph	The giRaph package for graph representation in R
gld	Basic functions for the generalised (Tukey) lambda distribution
gllm	Generalised log-linear model
glmmML	Generalized linear models with random intercept
glmpath	L1 Regularization Path for Generalized Linear Models and Cox Prop
glpk	GNU Linear Programming Kit
gmodels	Various R programming tools for model fitting
gmp	Multiple Precision Arithmetic
gmt	Interface between GMT 4.0 map-making software and R
gnm	Generalized Nonlinear Models
gnomeGUI	GNOME Console for R
GPArotation	GPA Factor Rotation
gpclib	General Polygon Clipping Library for R
gplots	Various R programming tools for plotting data
gpls	Classification using generalized partial least squares
grasper	Generalized Regression Analysis and Spatial Predictions for R
GRASS	Interface between GRASS 5.0 geographical information system and R
gRbase	gRbase - a package for graphical modelling in R
gregmisc	Backword compatibility package for gregmisc bundle
gridBase	Integration of base and grid graphics
grnnR	A Generalized Regression Neural Network
grouped	Regression Analysis of Grouped and Coarse Data
GroupSeq	Performing computations related to groupseqential boundaries.
gsl	wrapper for the Gnu Scientific Library
gss	General Smoothing Splines
gstat	geostatistical modelling, prediction and simulation
gsubfn	Like gsub but with replacement function instead of string
gtkDevice	Loadable and embeddable gtk device driver for R
gtools	Various R programming tools
hapassoc	Likelihood inference of trait associations with SNP haplotypes an
haplo.ccs	Estimate Haplotype Relative Risks in Case-Control Data
haplo.stats	Statistical Analysis of Haplotypes with Traits and Covariates whe
hapsim	Haplotype Data Simulation
hddplot	Use known groups in high-dimensional data to derive scores for pl
hdf5	HDF5
hdrcde	Highest density regions and conditional density estimation
hett	Heteroscedastic t regression
HI	Simulation from distributions supported by nested hyperplanes
hier.part	Hierarchical Partitioning
hierfstat	Estimation and tests of hierarchical F-statistics
HighProbability	HighProbability estimates which alternative hypotheses have frequ
Hmisc	Harrell Miscellaneous
hmm.discnp	Hidden Markov models with discrete non-parametric observation dis
hoa	Bundle of cond, marg, nlreg, csampling
homals	Homogeneity Analysis in R
hopach	Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
howmany	A lower bound for the number of correct rejections
HSAUR	A Handbook of Statistical Analyses Using R
HTMLapplets	Dynamic visualisation in HTML documents
httpRequest	Basic HTTP Request
hwde	Models and tests for departure from Hardy-Weinberg equilibrium an
hybridHclust	Hybrid hierarchical clustering
HyperbolicDist	The hyperbolic distribution
ICE	Iterated Conditional Expectation
Icens	NPMLE for Censored and Truncated Data
IDPmisc	Utilities of Institute of Data Analyses and Process Design (www.i
ifs	Iterated Function Systems
igraph	Routines for network analysis.
iid.test	iid-test
impute	impute: Imputation for microarray data
ineq	Measuring inequality, concentration and poverty
intcox	Iterated Convex Minorant Algorithm for interval censored event da
ipred	Improved Predictors
irr	Various Coefficients of Interrater Reliability and Agreement
ismev	An Introduction to Statistical Modeling of Extreme Values
ISwR	Introductory Statistics with R
its	Irregular Time Series
JavaGD	Java Graphics Device
JLLprod	Nonparametric Estimation of Homothetic and Generalized Homothetic
JointGLM	Joint Modelling of Mean and Dispersion
kappalab	Non-additive measure and integral manipulation functions
Kendall	Kendall rank correlation and Mann-Kendall trend test
kernlab	Kernel Methods Lab
KernSmooth	Functions for kernel smoothing for Wand & Jones (1995)
kinship	mixed-effects Cox models, sparse matrices, and modeling data from
kknn	Weighted k-Nearest Neighbors
klaR	Classification and visualization
km.ci	Confidence intervals for the Kaplan-Meier estimator
KMsurv	Data sets from Klein and Moeschberger (1997), Survival Analysis
knncat	Nearest-neighbor classification with categorical variables
knnFinder	Fast Near Neighbour Search
knnTree	k-nn classification with variable selection inside leaves of a tr
kohonen	Supervised and unsupervised self-organising maps
ks	Kernel smoothing
kza	Kolmogorov-Zurbenko Adaptive Filter for Image Detection
kzft	Kolmogorov-Zurbenko Fourier transform and application
labdsv	Laboratory for Dynamic Synthetic Vegephenomenology
labstatR	Libreria del Laboratorio di Statistica con R
lars	Least Angle Regression, Lasso and Forward Stagewise
lasso2	L1 constrained estimation aka 'lasso'
latentnet	Latent position and cluster models for statistical networks
lattice	Lattice Graphics
latticeExtra	Extra Graphical Displays based on lattice
lazy	Lazy Learning for Local Regression
ldDesign	Design of experiments for detection of linkage disequilibrium
LDheatmap	Graphical display of pairwise linkage disequilibria between SNPs
leaps	regression subset selection
lgtdl	A set of methods for longitudinal data objects.
limma	Linear Models for Microarray Data
linprog	Linear Programming / Optimization
lme4	Linear mixed-effects models using S4 classes
lmeSplines	lmeSplines
LMGene	LMGene Software for Date Transformation and Identification of Dif
lmm	Linear mixed models
lmomco	L-moments, L-comoments, Trimmed L-moments, and Distributions
Lmoments	L-moments and quantile mixtures
lmtest	Testing Linear Regression Models
locfdr	Computes local false discovery rates
locfit	Local Regression, Likelihood and Density Estimation.
lodplot	Plot a genome scan
LogicReg	Logic Regression
logistf	Firth's bias reduced logistic regression
logspline	Logspline density estimation routines
lokern	Kernel Regression Smoothing with Local or Global Plug-in Bandwidt
longitudinal	Analysis of Multiple Time Course Data
longmemo	Statistics for Long-Memory Processes (Jan Beran) -- Data and Func
LoopAnalyst	A collection of tools to conduct Levins' Loop Analysis
LowRankQP	Low Rank Quadratic Programming
lpridge	Local Polynomial (Ridge) Regression
lpSolve	Interface to Lp_solve v. 5.5 to solve linear/integer programs
lsa	Latent Semantic Analysis
lspls	LS-PLS Models
ltm	Latent Trait Models under IRT
maanova	Tools for analyzing Micro Array experiments
magic	create and investigate magic squares
mapdata	Extra Map Databases
mapLD	Linkage Disequilibrium Mapping
mapproj	Map Projections
maps	Draw Geographical Maps
maptools	tools for reading and handling shapefiles
maptree	Mapping, pruning, and graphing tree models
mAr	Multivariate AutoRegressive analysis
MarkedPointProcess	Analysis of Marks of Marked Point Processes
Matching	Multivariate and Propensity Score Matching with Balance Optimizat
MatchIt	MatchIt: Nonparametric Preprocessing for Parametric Casual Infere
mathgraph	Directed and undirected graphs
matlab	MATLAB emulation package
Matrix	A Matrix package for R
maxstat	Maximally Selected Rank Statistics
mblm	Median-Based Linear Models
mcgibbsit	Warnes and Raftery's MCGibbsit MCMC diagnostic
mclust	Model-based cluster analysis
mcmc	Markov Chain Monte Carlo
MCMCpack	Markov chain Monte Carlo (MCMC) Package
mda	Mixture and flexible discriminant analysis
MEMSS	Data sets from Mixed-effects Models in S
merror	Accuracy and Precision of Measurements
meta	Meta-Analysis
mfp	Multivariable Fractional Polynomials
mgcv	GAMs with GCV smoothness estimation and GAMMs by REML/PQL
mice	Multivariate Imputation by Chained Equations
micEcdat	Individual data sets for micro-econometrics
micEcon	Microeconomics
mimR	A package for graphical modelling in R
minpack.lm	R interface for MINPACK least squares optimization library
misc3d	Miscellaneous 3D Plots
mitools	Tools for multiple imputation of missing data
mix	Estimation/multiple Imputation for Mixed Categorical and Continuo
mixreg	Functions to fit mixtures of regressions.
mlbench	Machine Learning Benchmark Problems
mlica	Independent Component Analysis using Maximum Likelihood
mlmRev	Examples from Multilevel Modelling Software Review
mmlcr	Mixed-Mode Latent Class Regression
mnormt	The multivariate normal and t distributions
MNP	R Package for Fitting the Multinomial Probit Model
moc	GENERAL NONLINEAR MIXTURES OF CURVES
modeltools	Tools and Classes for Statistical Models
moments	Moments, skewness, kurtosis and related tests
monoProc	strictly monotone smoothing procedure
monreg	Nonparametric monotone regression
MPV	Data Sets from Montgomery, Peck and Vining's Book
MSBVAR	Bayesian Vector Autoregression Models, Impulse Responses and Fore
msm	Multi-state Markov and hidden Markov models in continuous time
muhaz	Hazard Function Estimation in Survival Analysis
multcomp	Multiple Tests and Simultaneous Confidence Intervals
multilevel	Multilevel Functions
multinomRob	Robust Estimation of Overdispersed Multinomial Regression Models
multtest	Resampling-based multiple hypothesis testing
mvbutils	MVB's utilities for R
mvnmle	ML estimation for multivariate normal data with missing values.
mvnormtest	Normality test for multivariate variables
mvoutlier	Multivariate outlier detection based on robust methods
mvpart	Multivariate partitioning
mvtnorm	Multivariate Normal and T Distribution
NADA	Nondetects And Data Analysis for environmental data
ncdf	Interface to Unidata netCDF data files
ncomplete	ncomplete
ncvar	High-level R Interface to NetCDF Datasets
negenes	Estimating the number of essential genes in a genome
network	Classes for Relational Data
neural	Neural Networks
nFDR	Nonparametric Estimate of FDR Based on Bernstein Polynomials
nice	Get or Set UNIX Niceness
NISTnls	Nonlinear least squares examples from NIST
nlme	Linear and nonlinear mixed effects models
nlmeODE	Non-linear mixed-effects modelling in nlme using differential equ
nltm	Nonlinear Transformation Models
nor1mix	Normal (1-d) Mixture Models {Classes and Methods}
norm	Analysis of multivariate normal datasets with missing values
normalp	Package for exponential power distributions (EPD)
NORMT3	Evaluates complex erf, erfc and density of sum of Gaussian and St
nortest	Tests for Normality
noverlap	ncomplete
npmc	Nonparametric Multiple Comparisons
numDeriv	Accurate Numerical Derivatives
nws	R functions for NetWorkSpaces and Sleigh
Oarray	Arrays with arbitrary offsets
odesolve	Solvers for Ordinary Differential Equations
onion	octonions and quaternions
optmatch	Functions for optimal matching
orientlib	Support for orientation data
ouch	Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses
outliers	Tests for outliers
oz	Plot the Australian coastline and states
pamr	Pam: prediction analysis for microarrays
pan	Multiple imputation for multivariate panel or clustered data
panel	Panel
papply	Parallel apply function using MPI
partsm	Periodic Autoregressive Time Series Models
party	A Laboratory for Recursive Part(y)itioning
pastecs	Package for Analysis of Space-Time Ecological Series
pbatR	Frontend to PBAT to run within R.
PBSmapping	PBS Mapping 2
pcaPP	Robust PCA by Projection Pursuit
pcurve	Principal Curve analysis
pear	Package for Periodic Autoregression Analysis
permax	permax
permtest	Permutation test to compare variability within and distance betwe
perturb	Tools for evaluating collinearity
pgam	Poisson-Gamma Additive Models.
pgirmess	Data analysis in ecology
pheno	Auxiliary functions for phenological data analysis
phpSerialize	Serialize R to PHP associative array
PHYLOGR	Functions for phylogenetically based statistical analyses
pinktoe	Graphically traverse a tree via GUI widgets or web based system
pixmap	Bitmap Images ("Pixel Maps")
PK	Basic Pharmacokinetics
PKfit	PKfit- A Tool for Data Analysis in Pharmacokinetics
plotrix	Various plotting functions
pls.pcr	PLS and PCR functions
pls	Partial Least Squares Regression (PLSR) and Principal Component R
plsgenomics	PLS analyses for genomics
plugdensity	Plug-in Kernel Density Estimation
polspline	Polynomial spline routines
polyapost	Simulating from the Polya posterior
polycor	Polychoric and Polyserial Correlations
polynom	A collection of functions to implement a class for univariate pol
popgen	Statistical and Population Genetics
portfolio	Analysing equity portfolios
POT	Generalized Pareto Distribution and Peaks Over Threshold
powerpkg	Power analyses for the affected sib pair and the TDT design
ppc	Peak Probability Contrasts
pps	Functions for PPS sampling
prabclus	Test for clustering of presence-absence data
princurve	Fits a Principal Curve in Arbitrary Dimension
ProbForecastGOP	Probabilistic Weather Field Forecast using the GOP method
proto	Prototype object-based programming
pscl	Political Science Computational Laboratory, Stanford University
pspline	Penalized Smoothing Splines
psy	Various procedures used in psychometry
PTAk	Principal Tensor Analysis on k modes
pvclust	Hierarchical Clustering with P-Values via Multiscale Bootstrap Re
pwr	Basic functions for power analysis
pwt	Penn World Table
QCA	Qualitative Comparative Analysis
qcc	Quality Control Charts
qtl	Tools for analyzing QTL experiments
qtlDesign	Design of QTL experiments
quadprog	Functions to solve Quadratic Programming Problems.
quantchem	Quantitative chemical analysis: calibration and evaluation of res
quantreg	Quantile Regression
quantregForest	Quantile Regression Forests
qvalue	Q-value estimation for false discovery rate control
qvcalc	Quasi variances for factor effects in statistical models
R.matlab	Read and write of MAT files together with R-to-Matlab connectivit
R.oo	R object-oriented programming with or without references
R.utils	Various programming utilities
R2HTML	HTML exportation for R objects
R2WinBUGS	Running WinBUGS from R
race	Racing methods for the selection of the best
RadioSonde	Tools for plotting skew-T diagrams and wind profiles
rake	Normalize sample weights using marginal total population weights.
randaes	Random number generator based on AES cipher
RandomFields	Simulation and Analysis of Random Fields
randomForest	Breiman and Cutler's random forests for classification and regres
RandVar	Implementation of random variables
rankreg	Rank regression for censored data AFT model.
RArcInfo	Functions to import data from Arc/Info V7.x binary coverages
RBloomberg	R/Bloomberg
rbugs	Fusing R and OpenBugs
rcdd	rcdd (C Double Description for R)
Rcmdr	R Commander
RColorBrewer	ColorBrewer palettes
rcom	R COM Client Interface and internal COM Server
RcppTemplate	Rcpp R/C++ interface library package template
rda	Shrunken Centroids Regularized Discriminant Analysis
ref	References for R
regress	Gaussian linear models with linear covariance structure
relaimpo	Relative importance of regressors in linear models
relax	relax -- R Editor for Literate Analysis and lateX
reldist	Relative Distribution Methods
relimp	Relative Contribution of Effects in a Regression Model
relsurv	Relative survival regression
reshape	Flexibly reshape data.
ResistorArray	electrical properties of resistor networks
resper	Sampling from restricted permutations
RFA	Regional Frequency Analysis
Rfwdmv	Forward Search for Multivariate Data
rgdal	Bindings for the Geospatial Data Abstraction Library
rgenoud	R version of GENetic Optimization Using Derivatives
rggobi	Interface between R and GGobi
rgl	3D visualization device system (OpenGL)
RGrace	RGrace
RGraphics	Data and Functions from the book R Graphics
RII	Relative index of inequality estimation
rimage	Image Processing Module for R
riv	Robust instrumental variables estimator
rJava	Low-level R to Java interface
Rlab	Functions and Datasets Required for ST370 class
rlecuyer	R interface to RNG with multiple streams
RLMM	A Genotype Calling Algorithm for Affymetrix SNP Arrays
Rlsf	Interface to the LSF Queuing System
Rmdr	R-Multifactor Dimensionality Reduction
rmeta	Meta-analysis
rmetasim	An individual-based population genetic simulation environment
Rmpi	Interface (Wrapper) to MPI (Message-Passing Interface)
RMySQL	R interface to the MySQL database
RNetCDF	R Interface to NetCDF Datasets
roblm	MM-regression estimators
robustbase	Basic Robust Statistics
ROCR	Visualizing the performance of scoring classifiers.
RODBC	ODBC database access
ROracle	Oracle database interface for R
Rpad	Workbook-style, web-based interface to R
rpart.permutation	Permutation testing of rpart models
rpart	Recursive Partitioning
rpvm	R interface to PVM (Parallel Virtual Machine)
rqmcmb2	Markov Chain Marginal Bootstrap for Quantile Regression
RQuantLib	R interface to the QuantLib library
rrcov	Scalable Robust Estimators with High Breakdown Point
rrp	Random Recursive Partitioning
RScaLAPACK	A seamless interface to perform parallel computation on linear al
rsprng	R interface to SPRNG (Scalable Parallel Random Number Generators)
RSQLite	SQLite interface for R
rstream	Streams of random numbers
RSvgDevice	An R SVG graphics device.
rtiff	A tiff reader for R.
RUnit	R Unit test framework
rv	Simulation-based random variable object class in R
Rwave	Time-Frequency analysis of 1-D signals
RWeka	R/Weka interface
RWinEdt	R-WinEdt
rwt	Rice Wavelet Toolbox wrapper
RXshrink	Maximum Likelihood Shrinkage via Ridge or Least Angle Regression
sac	Semiparametric Analysis of Changepoint
SAGx	Statistical Analysis of the GeneChip
sampfling	Sampford sampling (w/o replacement and unequal probabilities)
sampling	Sampling survey
samr	SAM: Significance Analysis of Microarrays
sandwich	Robust Covariance Matrix Estimators
SASmixed	Data sets from "SAS System for Mixed Models"
sca	Simple Component Analysis
scape	Statistical catch-at-age plotting environment
scapeMCMC	MCMC diagnostic plots
scatterplot3d	3D Scatter Plot
SciViews	Bundle of svMisc, svIO, svViews, svDialogs, svSocket, svGUI, svIDE, svWidgets
scope	Data Manipulation Using Arbitrary Row and Column Criteria
scuba	Scuba diving calculations and decompression models
seacarb	Calculates parameters of the seawater carbonate system
seas	Seasonal analysis and graphics, especially for climatology
seewave	Time wave analysis and graphical representation
segmented	Segmented relationships in regression models
sem	Structural Equation Models
SemiPar	Semiparametic Regression
SensoMineR	Sensory data analysis with R
SenSrivastava	Datasets from Sen & Srivastava
seqinr	Biological Sequences Retrieval and Analysis
SeqKnn	Sequential KNN imputation method
seqmon	Sequential Monitoring of Clinical Trials
session	Functions for interacting with, saving and restoring R sessions.
setRNG	Set (normal) random number generator and seed
sfsmisc	Utilities from Seminar fuer Statistik ETH Zurich
sgeostat	An Object-oriented Framework for Geostatistical Modeling in S+
shapefiles	Read and Write ESRI Shapefiles
shapes	Statistical shape analysis
SharedHT2	Shared Hotelling T2 test for small sample microarray experiments
simex	SIMEX- and MCSIMEX-Algorithm for measurement error models
simpleboot	Simple Bootstrap Routines
SIN	A SINful Approach to Selection of Gaussian Graphical Markov Model
skewt	The Skewed Student-t Distribution
sm	Smoothing methods for nonparametric regression and density estima
sma	Statistical Microarray Analysis
smatr	(Standardised) Major Axis Estimation and Testing Routines
smoothSurv	Survival Regression with Smoothed Error Distribution
sn	The skew-normal and skew-t distributions
sna	Tools for Social Network Analysis
snow	Simple Network of Workstations
snowFT	Fault Tolerant Simple Network of Workstations
som	Self-Organizing Map
SoPhy	Soil Physics Tools
sound	A Sound Interface for R
sp	classes and methods for spatial data
SparseLogReg	Sparse logistic regression
SparseM	Sparse Linear Algebra
spatialCovariance	Computation of spatial covariance matrices for data on rectangles
spatstat	Spatial Point Pattern analysis, model-fitting and simulation
spc	Statistical Process Control
spdep	Spatial dependence: weighting schemes, statistics and models
spe	Stochastic Proximity Embedding
spectralGP	Approximate Gaussian processes using the Fourier basis
spectrino	Spectra organizer, visualization and data extraction
spgwr	Geographically weighted regression
splancs	Spatial and Space-Time Point Pattern Analysis
ssanv	Sample Size Adjusted for Nonadherence or Variability of input par
sspir	State Space Models in R
StatDataML	Read and write StatDataML files
statmod	Statistical Modeling
stepwise	Stepwise detection of recombination breakpoints
StoppingRules	Stopping rules for microarray classifiers
strucchange	Testing for Structural Change
subselect	Selecting variable subsets
sudoku	Sudoku Puzzle Generator and Solver
supclust	Supervised Clustering of Genes
superpc	Supervised principal components
SuppDists	Supplementary distributions
survBayes	Fits a proportional hazards model to time to event data by a Baye
surveillance	Outbreak detection algorithms for surveillance data
survey	analysis of complex survey samples
survival	Survival analysis, including penalised likelihood.
survrec	Survival analysis for recurrent event data
svmpath	svmpath: the SVM Path algorithm
SwissAir	Air Quality Data of Switzerland for one year in 30 min Resolution
systemfit	Simultaneous Equation Estimation Package
tapiR	Tools for accessing UK parliamentary information in R
taskPR	Task-Parallel R Package
tcltk2	SciViews GUI API - More tcltk
tdist	Distribution of a linear combination of independent Student's t-v
tdthap	TDT tests for extended haplotypes
TeachingDemos	Demonstrations for teaching and learning
tensor	Tensor product of arrays
tgp	Bayesian treed Gaussian process models
time	Time tracking for developers
tkrplot	TK Rplot
tlnise	Two-level normal independent sampling estimation
tree	Classification and regression trees
treeglia	Stem-analysis on tree cross-sections
tripack	Triangulation of irregularly spaced data
truncgof	GoF tests allowing for left truncated data
trust	Trust Region Optimization
tseries	Time series analysis and computational finance
tseriesChaos	Analysis of nonlinear time series
tsfa	Time Series Factor Analysis
tuneR	Analysis of music
twang	Toolkit for Weighting and Analysis of Nonequivalent Groups
tweedie	Tweedie exponential family models
udunits	interface to Unidata's routines to convert units
ump	Uniformly Most Powerful Tests
UNF	Tools for creating universal numeric fingerprints for data.
untb	ecological drift under the UNTB
urca	Unit root and cointegration tests for time series data
urn	Urn : Sampling Without Replacement
uroot	Unit Root Tests and Graphics for Seasonal Time Series
UsingR	Data sets for the text "Using R for Introductory Statistics"
USPS	Unsupervised and Supervised methods of Propensity Score Adjustmen
vabayelMix	Variational Bayesian Mixture Modelling
VaR	Value at Risk estimation
vardiag	A package for variogram diagnostics
varmixt	Mixture model on the Variance for the analysis of gene expression
varSelRF	Variable selection using random forests
vcd	Visualizing Categorical Data
VDCutil	utilities supporting the VDC system
vegan	Community Ecology Package
verification	Forecast verification utilities.
verify	Construction of test suites using verify objects
vioplot	Violin plot
VLMC	VLMC -- Variable Length Markov Chains